Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs114211674 chr5:179484518 A/C 1.35E-5 176 24.23 32.15 25.17 KM Plot
PCPG rs114285567 chr3:39772303 G/T 9.42E-8 175 25.77 19.88 19.87 KM Plot
PCPG rs114335836 chr16:89974733 C/T 0.00018 173 25.87 20.28 36.37 KM Plot
PCPG rs11443636 chr11:89958532 C/CA 0.000117 175 27.2 19.07 14.73 KM Plot
PCPG rs114436460 chr10:69710484 G/A 0 176 25.87 18.2 2.28 KM Plot
PCPG rs11444598 chr2:242569791 C/CA 1.07E-10 172 25.67 21.9 10.3 KM Plot
PCPG rs11453906 chr3:182618390 G/GA 1.18E-5 173 25.87 26.88 11.78 KM Plot
PCPG rs114606309 chr1:36924630 G/C 8.21E-5 175 25.53 25.97 10.3 KM Plot
PCPG rs11463497 chr17:3287288 C/CA 0.000175 176 18.1 25.43 26.88 KM Plot
PCPG rs114793754 chr7:105152162 G/C 5.56E-5 177 20.17 29.43 2.28 KM Plot
PCPG rs114865717 chr7:105158526 C/T 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs114927373 chr10:69738535 C/T 0 177 25.87 18.2 2.28 KM Plot
PCPG rs115219347 chr2:241507613 G/A 2.62E-7 174 26.57 20.25 7.2 KM Plot
PCPG rs115270507 chr3:115555527 C/T 1.09E-5 176 25.2 26.37 13.75 KM Plot
PCPG rs11527803 chr10:50552555 A/T 3.62E-6 178 24.52 34.37 25.17 KM Plot